PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980292.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27980.2 Da PI: 10.1783

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.3	3.5e-27	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgkl+++ XP_024980292.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLHDFT 58 8**********************************************97 PP
2	K-box	77.9	2.5e-26	84	170	12	98
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a+ +q e+ +L+++++ Lq+++R+llGe+L+ L++++Lq+Le +Le slk +R+kK+++l+++++el +k + +enk+L++k+ XP_024980292.1 84 SEAKFWQGEAVQLRQQLQYLQQNHRQLLGEELSGLNVNDLQKLEIKLEMSLKGVRKKKEQVLMDEVKELNHKGSFVGQENKELHEKV 170 6789*********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLHDFTSS 60 SMRNVIERYN KVREEHHRLL NPISEAKFWQ GEAVQLRQQL QYLQQNHRQL LGEELSGLNV 120 NDLQKLEIKL EMSLKGVRKK KEQVLMDEVK ELNHKGSFVG QENKELHEKV NLLRQENTKL 180 QKEVYELWSM AEATKSSTTD MHHKNYELHA PINLQLSQPQ PQKNCISVET MKLGLQLNSK 240 AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	1e-82	MIKC_MADS family protein