PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980323.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 235aa    MW: 27335.6 Da    PI: 9.7656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072370247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WT e  + +  a + + ++   +W+ +a+ ++ g+++++++  +  +
   XP_024980323.1 23 SKWTNEQNKWFESALAIFDTEtpdRWSNVAALVP-GKSEYDVRKQYEVL 70
                     58********************************.********999765 PP
2Myb_DNA-binding41.72.6e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + + +G+g+W+ I+r +  ++t+ q+ s+ qky
   XP_024980323.1 122 PWTEEEHRRFLMGLQVHGKGDWRNISRNFVMTKTPTQVASHAQKY 166
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
METSSQSLHL LSSNNMMQEI KSSKWTNEQN KWFESALAIF DTETPDRWSN VAALVPGKSE  60
YDVRKQYEVL KADINDIEAG LIPVPGYFAF KSELVEDRGF YSFGNRLLRS RSFDQERRKG  120
IPWTEEEHRR FLMGLQVHGK GDWRNISRNF VMTKTPTQVA SHAQKYYARQ HSDGKEKRRP  180
SIHDITTVHL PENANFSGER EKFSPLVSTP NNRNPNIRVY NSGLYFQPTR YQVQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.12e-76MYB family protein