PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980347.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 328aa MW: 34785.2 Da PI: 9.7744

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.2	3.7e-35	67	150	3	92
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 + +++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a++ai+e+tgt++ +a ++ + ++ +++ ++ XP_024980347.1 67 PPRRPSKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLEHAERAIIEATGTGTVPAIAVsvN--------GTLKIPTTSS 150 66899**********************************************************88888444221........1111111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MESQHQHATN TPSKSDPLLQ VGDSPEIPQL QQHQPPMFKQ EPSENDSMAG SMPAPIMPMS 60 TQMTVAPPRR PSKDRHTKVE GRGRRIRMPA VCAARIFQLT RELGHKSDGE TIRWLLEHAE 120 RAIIEATGTG TVPAIAVSVN GTLKIPTTSS EGEGVSKRRK RASNSEFYDA NDSLSSGLAP 180 VAPQGLVPVW TMGAPPTMGM QGAAFFLIPP ASISGGPSSA HLPQLWAIPA GATPVFNVPA 240 RPISSYVSEG VSSGGGVQTP SRSVSNSSGS EDQLGKVSTK LAPSSASIST TSSAQMLRDF 300 SLKIYDKREL QFMMGSSTDQ NPSSKPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-70	TCP family protein