PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980409.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 202aa    MW: 21780.6 Da    PI: 7.7105
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.5e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+  +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_024980409.1   2 SCNGCRVLRKGCNDNCILRHSLhgictPQAQANATVFVAKFFGRAGLMSFLASVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQS 96 
                     6************************99******************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_024980409.1  97 AVETVLR 103
                     *998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSCNGCRVLR KGCNDNCILR HSLHGICTPQ AQANATVFVA KFFGRAGLMS FLASVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQSAVET VLRGGSVRAM PELFSVGSTP  120
ENDDTSEAIN SNFDVSKLRP QDLNLGLSSS GLDDEMRSGR HSDRRTTEKR RAVSPSDASE  180
TTTLESGLGS ACSETKLLRL FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-66LBD family protein