PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980440.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 308aa    MW: 34347.6 Da    PI: 5.2813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-102342741055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le Av+Y+k Lq
  XP_024980440.1 234 RKRRERINERLRILQSLVPNG-----TKVDISTMLEDAVQYVKFLQ 274
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MESVTAMLGE WNSFSGLQFT EEAYFMAQLL GSFPLPSDSP NVSPFEVPST SWPQQELTMT  60
IDEVDETSVY LSDDTRSNPH CLLTDGGSIL SRTSIDCLKD REKSILSSIP LLSDNTLMKG  120
KERDEILVPQ SGKDNKLSAS SRKRSCSMAD VHDNREKIKC RKSRKLISKG NGTEADHDAV  180
FGQIMKIYGS DDDSNWSQES STSSRPKETA NLNSNGKTKA NRGSATDPQS VYARKRRERI  240
NERLRILQSL VPNGTKVDIS TMLEDAVQYV KFLQLQIKLL SSDDLWMYAP IAYNGMEIGL  300
ESTIPSPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-46bHLH family protein