PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980446.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 230aa    MW: 26342.1 Da    PI: 10.0838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.8e-20130219198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  +k ++  +tl de+g +W+ k+    ++ +  l++GWk+F+++++L +gD +vF+l++ + f  +v 
  XP_024980446.1 130 FVKPMLQSHVSGGFWLGLPVHFCKSHL-PK-RDEIMTLVDEDGDEWQTKY--LPRKTG--LSGGWKGFAEDHKLVDGDALVFQLIKLTVF--KVY 216
                     89************************4.32.4568***************..555544..***********************9986777..777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_024980446.1 217 IIR 219
                     766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVASKKVNYE ESRMKRLEEN KKRMEELKLT ALAQSLRTTL SPKPSPMKKV KRTPRQPLDL  60
SAVRRSNRVA DKPPASYKEV PIEPLGRRRS YGKSARDLSN RVYASHEDRE YTSGRAEELH  120
STLEADFPSF VKPMLQSHVS GGFWLGLPVH FCKSHLPKRD EIMTLVDEDG DEWQTKYLPR  180
KTGLSGGWKG FAEDHKLVDG DALVFQLIKL TVFKVYIIRV NQAEDGDESR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-87B3 family protein