PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980454.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 514aa MW: 56837.7 Da PI: 6.1456

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	250	309	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_024980454.1 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGNHNHP 309 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MGGEEENTQM EIDLTLKLDA QDQEPAKDSE SDHHDQVDVD DDDDDDDRRL QSPDHEVQDS 60 QHDVPTTTSP TEAPERQHLD PHHQEKLSVL QMEMNRMKEE NKVLRQVVEQ TMKDYYDLQM 120 KFSVIRQSPN QIKDPESFLS LNGHDRSQET KKNSPRSLSL QESENKELGL SLTIQSNTQH 180 PRNHQELNHK DLSESATMFT PMQQSNLIHP SNFGGGGESK AGNIANNPVA SLQNRKARVS 240 VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQR CLEDMSILIT 300 TYEGNHNHPL PVGATAMAST TSAAAASFML MDSNNPLSSE MGTMNQSPFT NYHMSSGILN 360 PNSSPYSSPH MRTMNPNDPS KGIVFDLTNN PINPHHIPIS SPSPQLGFPW MANKFPNGSH 420 FSRSKQVDGM NGVWEGGEDS NSNNKCKSIL AENMSAIASH PKFRVAVAAA ISSMINKESQ 480 TSSNVHADGS RDRESGGSSS GGKTWVLESL SRSG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MGGEEENTQM EIDLTLKLDA QDQEPAKDSE SDHHDQVDVD DDDDDDDRRL QSPDHEVQDS  60
QHDVPTTTSP TEAPERQHLD PHHQEKLSVL QMEMNRMKEE NKVLRQVVEQ TMKDYYDLQM  120
KFSVIRQSPN QIKDPESFLS LNGHDRSQET KKNSPRSLSL QESENKELGL SLTIQSNTQH  180
PRNHQELNHK DLSESATMFT PMQQSNLIHP SNFGGGGESK AGNIANNPVA SLQNRKARVS  240
VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQR CLEDMSILIT  300
TYEGNHNHPL PVGATAMAST TSAAAASFML MDSNNPLSSE MGTMNQSPFT NYHMSSGILN  360
PNSSPYSSPH MRTMNPNDPS KGIVFDLTNN PINPHHIPIS SPSPQLGFPW MANKFPNGSH  420
FSRSKQVDGM NGVWEGGEDS NSNNKCKSIL AENMSAIASH PKFRVAVAAA ISSMINKESQ  480
TSSNVHADGS RDRESGGSSS GGKTWVLESL SRSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	9e-74	WRKY family protein