PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980468.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 303aa MW: 32889.1 Da PI: 10.2613

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.1e-14	127	172	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W+++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_024980468.1 127 LPWSEDEHRRFLTGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 172 69*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MGRKCSHCGN IGHNSRTCTS YNRTIVNNNS TVHLVGGGGG GGGGGLRLFG VQLDSPSHSM 60 VMMKKCLSLD CLPSSSPSLL PSASASQSPS SSLSSSRVSV NDLHKNTSVG YLSDGLIARA 120 QERKKGLPWS EDEHRRFLTG LEKLGKGDWR GISRNFVTTR TPTQVASHAQ KYFLRQATLV 180 KKKRRSSLFD LVRCNGIKNA KNHCVISRSS SFDDDHRDQS DDLSLMDFNS LKQENIVFYN 240 NPIVKSYQTT SIYSHLKNAS PSGTIGSKSG TLDLELTLAS PKPMDQNKSS TPSLQLGPII 300 SVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	185	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-49	MYB_related family protein