PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980471.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 200aa    MW: 22884.4 Da    PI: 4.8098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.33.7e-3791281128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  + +  ++i+++d+y ++PwdL+ k+  e k+wy++s+r         +nr+t +gyWka g d++++s+
  XP_024980471.1   9 LPPGFRFCPTDEELVVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLDGKAMVEGKKWYYYSRRT--------QNRITVNGYWKAWGCDEQIMSS 94 
                     79*************************998.89**************977777899******984........589*****************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kk  vf+ g+ap+g+kt+W+m+e+rl
  XP_024980471.1  95 sSSKRVGVKKYYVFHIGEAPEGVKTNWIMQEFRL 128
                     67788***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MGDNNNVNLP PGFRFCPTDE ELVVHFLQRK ASLLPYHPDI IPDLDLYPYD PWDLDGKAMV  60
EGKKWYYYSR RTQNRITVNG YWKAWGCDEQ IMSSSSSKRV GVKKYYVFHI GEAPEGVKTN  120
WIMQEFRLSD GAASSSSSGS TGRSKRRSHS KIDFSKWVIC RVVEHSCDND NDDDDGGTEL  180
SCLDEVFLSL DDFDDISFPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KRRSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-53NAC family protein