PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980555.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 207aa MW: 22786.3 Da PI: 7.7348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H ++H XP_024980555.1 55 YKCSVCNKEFATYQALGGHKSSH 77 9*************999999888 PP
2	zf-C2H2	13.9	0.00016	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++sFs+ L H r+H XP_024980555.1 107 HECSICHRSFSTGQALGGHKRRH 129 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MSLKPVTDKP TTTTAAHPST PATEEEYLAF CLMLLARGNS PAPPPPHHSH NFTSYKCSVC 60 NKEFATYQAL GGHKSSHRKN VQPNSDDDDH HHHLSTSSAL KTSNRVHECS ICHRSFSTGQ 120 ALGGHKRRHY DPGTGAAVTT SEGTASSTHV QPREFDLNLP AFPEFELGLN VDYWKKSQVL 180 NHEQEVESPL PTKKPRLLIA GDMANRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	6e-40	C2H2 family protein