PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980585.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 251aa    MW: 27479.8 Da    PI: 9.626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-204393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g
  XP_024980585.1 43 TRYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAQAYDSAARQFRG 93
                    68********.**********8...557************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MSHTRAPDYI NQPHLPSLFF SLPMAPRDKL DATTAAGNGG KETRYRGVRK RPWGRYAAEI  60
RDPGKKSRVW LGTFDTAEEA AQAYDSAARQ FRGAKAKTNF PFPTDLLLPT AVSGGTKLVT  120
RSPSESSSIV ESTNSVAPIA AAAPLPLPPE ALDLSLSHYP VGFPMARSLF LFHSQMNVNI  180
NNNNIHNRFN IFRSDRSIVR DPHLSIGAGC LAQSDSDSSP VNNFSYSSER PKQEKSVNLD  240
LDLNFPPPEV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-27ERF family protein