PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980695.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 408aa    MW: 44575.6 Da    PI: 6.7259
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.48.7e-37531612102
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++              +        + +s s a
  XP_024980695.1  53 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELpawkptattnattaT--------TTNSTSIA 139
                     79**************************************************************555544333222210........11111111 PP

             TCP  83 snsssg..kaaksaakskksqk 102
                     ++++++  ++a+ ++ s+++q+
  XP_024980695.1 140 DFEQNPdqQNANHHQLSHFEQH 161
                     1111112111111112222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MGESYQYHNQ QQLHQQQQQQ AATGSSRLGL RSSGGRGGGE IVEVQGGHIV RSTGRKDRHS  60
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKTAI DELAELPAWK  120
PTATTNATTA TTTNSTSIAD FEQNPDQQNA NHHQLSHFEQ HPDDNIVDNQ MGNSQNSSFL  180
PPSLDSDSIA DTIKSFFPMG ASSAPPNNIS SGMQFHQNFQ PPADLLSRTS SRSQDLRLSL  240
QSFQDPILQN HHQTEQNNNI YFDGSGWPDN QSGGFQRMVA WGGVGGGDAV SAGFVFSSQP  300
SPATPFLQPL FGQTTNNQLF NNNSQRGPLQ SSNPPSFRAW IDPPPPFTGV AIDQQPTLAF  360
HHPSSMSGFA SGLGRFSGFR IPARIQGEEE EHDGISDKPS SASSDSRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.23e-65TCP family protein