PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980860.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 1304aa MW: 148993 Da PI: 6.3727

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.4	4.8e-15	36	85	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +grW++eI+dp + +r +lg+++t++eAa +++a kl+g XP_024980860.1 36 KFRGVRKRR-WGRWASEIKDPI----TrQRLWLGTYDTPKEAAMVYDNAGIKLRG 85 89**887.******83....35*******************999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1304 aa Download sequence
MPVNANMTKT RNRPCAANLK ERTIKKKKTP EDNVRKFRGV RKRRWGRWAS EIKDPITRQR 60 LWLGTYDTPK EAAMVYDNAG IKLRGADAIT NFVLPTAIEK PPPTNITSMS NHHSKQKSLK 120 FPLADAPPSD YQSFDSIQLD DEVAFFDDFG ITPMAPGFIS ETGCGSPSTL KIDNYFEDIS 180 DNDISNYGGQ LQSSSGXNNI PYPDEHMDPN KCLQFQHTNL PHSSSDMTIT NPLSDSPNGN 240 HRLQGRNINV ADIEIVDITS DKEADHPVTI IDKIEGIFEE YLDHGDQSVI CECCDAKLWK 300 DEALQRKKCG TKTSYSLCCL YGKVQLPKEK EMDSSYVNLF RYVDSKSKYF MKNIRRYNSV 360 FSFTTMGGKI DTSINSGNAP YIYRLNGQNY HRMGSLLPTD GRKPKFSQLY IYDTENEVAN 420 THSSFSEKQE TSASNSDSLD IEIIQYLKDI LDPKNVLVKS YRIARDCFEC YPDVKVKLRL 480 IEKREKDGRT YNLPTASKVA ALIVGDDGGT IEKRDIIVQH QTGYLQSISE LHPSYLPLQY 540 PLLFPYGEDG YRFDIPHREI TSSRKRKITT VTMREFFAFK LQDRRNMFSL LLNARRLLQQ 600 FIVDGYTMIE IERLHYIRNQ QKLLRCKTYD ALCNVQEEGE CDLSNIGQRV ILPSSSPVEL 660 EVRRLIKDTC LNLDDRPDML CRLFKIKLDA LIRELKENEL FGKIQAVYRR RVDGRFIEKS 720 CVKLDNRNVV PYNKYLLKRY QAHINVEWCN QTSSIKYLFK YINKGPDRAT VAIVENSDDA 780 VTVNVVDEIK QYYDCRYLSA CEASWRIFGY DVYYRTPSVL RLLFHLPGQQ QVVFGAEDNI 840 DNVLNRPSVA SSMFISWMHC NQIYQEAREL TYVEFPTRDA CYALGLLDDD KEYIEAIEEA 900 NLTVSDLSIN EEQVKNLTLF EIEKILLRNN STLKNFSTLP YFDNDSLESS NNRLIAEELD 960 YNHYNLGXEF HTLVTALTDE QRGKTFLWKT LAASIRSKGE IVLNVASSGI ASLLLTCGKT 1020 AHSRFHIPLI LNEDSLCQMK PDSDIAGLIM KTTLIIWDEA PMVHKHAFEA LDRSMNDIFN 1080 AQRXGDSEMI FGGKIIVFGG DFRQILPVIP NAREGKVGGD NDGEAVIEIP HDLLITDYID 1140 PISALIEFVY PSILENVNNS AYFQERAILA PKNEVVQEIN ECLLSLFPGE EKEYLSSYTL 1200 CESEKLHDEF DKTLYSPDVL NGLKLSGIPN HRILLKVGVP IMLLRNIDQK SGLCNGTRLR 1260 VLTLGNRVIE AHVISGSNIG SRTFIPRMSL TPTDKRIPFK IWIM

Sequence ? help Back to Top

Protein Sequence Length: 1304 aa Download sequence

MPVNANMTKT RNRPCAANLK ERTIKKKKTP EDNVRKFRGV RKRRWGRWAS EIKDPITRQR  60
LWLGTYDTPK EAAMVYDNAG IKLRGADAIT NFVLPTAIEK PPPTNITSMS NHHSKQKSLK  120
FPLADAPPSD YQSFDSIQLD DEVAFFDDFG ITPMAPGFIS ETGCGSPSTL KIDNYFEDIS  180
DNDISNYGGQ LQSSSGXNNI PYPDEHMDPN KCLQFQHTNL PHSSSDMTIT NPLSDSPNGN  240
HRLQGRNINV ADIEIVDITS DKEADHPVTI IDKIEGIFEE YLDHGDQSVI CECCDAKLWK  300
DEALQRKKCG TKTSYSLCCL YGKVQLPKEK EMDSSYVNLF RYVDSKSKYF MKNIRRYNSV  360
FSFTTMGGKI DTSINSGNAP YIYRLNGQNY HRMGSLLPTD GRKPKFSQLY IYDTENEVAN  420
THSSFSEKQE TSASNSDSLD IEIIQYLKDI LDPKNVLVKS YRIARDCFEC YPDVKVKLRL  480
IEKREKDGRT YNLPTASKVA ALIVGDDGGT IEKRDIIVQH QTGYLQSISE LHPSYLPLQY  540
PLLFPYGEDG YRFDIPHREI TSSRKRKITT VTMREFFAFK LQDRRNMFSL LLNARRLLQQ  600
FIVDGYTMIE IERLHYIRNQ QKLLRCKTYD ALCNVQEEGE CDLSNIGQRV ILPSSSPVEL  660
EVRRLIKDTC LNLDDRPDML CRLFKIKLDA LIRELKENEL FGKIQAVYRR RVDGRFIEKS  720
CVKLDNRNVV PYNKYLLKRY QAHINVEWCN QTSSIKYLFK YINKGPDRAT VAIVENSDDA  780
VTVNVVDEIK QYYDCRYLSA CEASWRIFGY DVYYRTPSVL RLLFHLPGQQ QVVFGAEDNI  840
DNVLNRPSVA SSMFISWMHC NQIYQEAREL TYVEFPTRDA CYALGLLDDD KEYIEAIEEA  900
NLTVSDLSIN EEQVKNLTLF EIEKILLRNN STLKNFSTLP YFDNDSLESS NNRLIAEELD  960
YNHYNLGXEF HTLVTALTDE QRGKTFLWKT LAASIRSKGE IVLNVASSGI ASLLLTCGKT  1020
AHSRFHIPLI LNEDSLCQMK PDSDIAGLIM KTTLIIWDEA PMVHKHAFEA LDRSMNDIFN  1080
AQRXGDSEMI FGGKIIVFGG DFRQILPVIP NAREGKVGGD NDGEAVIEIP HDLLITDYID  1140
PISALIEFVY PSILENVNNS AYFQERAILA PKNEVVQEIN ECLLSLFPGE EKEYLSSYTL  1200
CESEKLHDEF DKTLYSPDVL NGLKLSGIPN HRILLKVGVP IMLLRNIDQK SGLCNGTRLR  1260
VLTLGNRVIE AHVISGSNIG SRTFIPRMSL TPTDKRIPFK IWIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	44	KKKKTPEDNVRKFRGVRKRR
2	26	45	KKKKTPEDNVRKFRGVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	2e-25	ERF family protein