PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980914.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 1360aa    MW: 154441 Da    PI: 5.9089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.36.8e-1113747433373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lLl+cA+ v+ gd + a++ L++++++as +gd+ qRla++f+ +++arla+++s+ly+a ++ + s    +e+l+a++++  ++P+ k++ + 
  XP_024980914.1 374 TLLLSCAQSVAVGDRRTANEQLNQIRQHASTSGDASQRLAHVFAIGIEARLAGTGSQLYAAKSAFRIS---AAEKLQAYQVYLSACPFKKIAMFF 465
                     79*********************************************************988888887...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++I+ea ++++++Hi+Df+i +G+QWp L++ L++Rp+g+p+lRiTg++ p++g   +e+leetg+rLa+++e+++v+fe+n+++++++++++
  XP_024980914.1 466 ANKMIYEASSNSSTLHIVDFGIAYGFQWPILIKHLSERPGGAPKLRITGIEFPQPGfrPAERLEETGRRLANYCERFNVSFEYNAIASQNWDTIK 560
                     *******************************************************9******************************999****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L+++++E laVn  ++ ++llde+v +es+rd+vLkl+++++P+++v+   + +++++ F++rf e+l +ysalfd+++a++ re+e+r + 
  XP_024980914.1 561 IDDLKLQRNEFLAVNTLIRFKNLLDETVVVESPRDKVLKLIRDMKPDIFVHGVVNGSYSAPFFVTRFRETLFHYSALFDMFDATIERENEHRLNF 655
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     E+e+ gre++nv+acega+r+er et+++W+ r+++aGFk  pl+++++++ ++ +r  + + +  +e+ +++++gWk+r L++ S+W
  XP_024980914.1 656 EKEFYGREAMNVIACEGADRVERPETYKQWQVRISRAGFKMKPLNQEIVSKLRCKVRGGYHKDFVFDEDGKWILQGWKGRILYASSCW 743
                     **********************************************************99888************************* PP
2GRAS352.85.4e-10898513581374
            GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93  
                      l++lL++cA+avss+++  ++++L+++++++sp+gd+ +Rla+yf+ AL ar a+++  ly+ l+ s+      s+ ++a+++++ ++P+ k+
  XP_024980914.1  985 LKSLLTQCAQAVSSNNKLGVERILKKIRNHSSPRGDSEERLAHYFADALDARYAGTGMDLYSNLALSKIM---ASDIVKAYQVYVSTCPFKKM 1074
                      5789**********************************************************99999998...899***************** PP

            GRAS   94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 
                      s++ aN++I + + g+ r+HiiDf+i +G+QWp+L+q L++R +g+p+lRiTg++ p++g   +e++eetg+rLa+++++++vpfe+++ +a+
  XP_024980914.1 1075 SNIYANKMIGNLARGSPRLHIIDFGILYGFQWPCLIQGLSARLGGTPRLRITGIDFPQPGfrPAERVEETGRRLADYCKRFNVPFEYHA-IAR 1166
                      ***********************************************************9*****************************.7** PP

            GRAS  185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 
                      +++d++le+L+++++E l+Vn+ ++l +++de+v  +   +r++vLkl+k ++P+++ +   + ++n++ Fl+rf ea   +s+lf+++ea +
  XP_024980914.1 1167 QWDDIKLEDLKINEDEILVVNCLYRLRNVPDETVLGAIdcPRESVLKLIKMIKPNLFLHGVVNGNYNAPFFLTRFREAYFNFSVLFNMFEAAM 1259
                      ********************************986555569**************************************************** PP

            GRAS  276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 
                       re+eer   E+e++gre+ nv+aceg++r+er et+++W++r e+aGF+pvp++ +++k++++ ++    + ++v+++ +++v+gWk+r ++
  XP_024980914.1 1260 NREDEERLLFEKEVIGREVINVIACEGTRRIERPETYKQWQARNERAGFTPVPMNGEIMKEVRAKVKIGFHRDFMVDDDGHWMVQGWKGRVIY 1352
                      ******************************************************************9766688******************** PP

            GRAS  369 svSaWr 374 
                      ++S+W+
  XP_024980914.1 1353 AISSWK 1358
                      *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1360 aa     Download sequence    
MVMEPRQNEF SDHINGFTLY DEDILPIFDQ NPGLANEYKF KDEHLDLSFL EHPYTAPDPN  60
PGSLSVSPGM LAQVESPDEF NDYVFKFIDQ ILVEEDDEDI QSMFCDPLDL QATERSLYQV  120
LGEAYPSSSQ PPLTLSPNVE NTEDNVFGSS GEYSTNSSTS NSNSTHPDWP GSYTFDSLPP  180
FTKTQSLENP PLWSFGSTTS DVGGTMDEML STQIAQNIFT DSESIKQFNK GMEEASKFLP  240
SSKPLVIDLD DYDLPSDSRD APPEVVVKEE KVEKEKPSNG VRGRKHYQLE DNDYPEERSS  300
KQSAVYVEED ELSEMFDRVL LGADANGKPI ACCKEPPILV DNKSQKNGLV VGSNNGRNAH  360
PQRKKTNEAV DISTLLLSCA QSVAVGDRRT ANEQLNQIRQ HASTSGDASQ RLAHVFAIGI  420
EARLAGTGSQ LYAAKSAFRI SAAEKLQAYQ VYLSACPFKK IAMFFANKMI YEASSNSSTL  480
HIVDFGIAYG FQWPILIKHL SERPGGAPKL RITGIEFPQP GFRPAERLEE TGRRLANYCE  540
RFNVSFEYNA IASQNWDTIK IDDLKLQRNE FLAVNTLIRF KNLLDETVVV ESPRDKVLKL  600
IRDMKPDIFV HGVVNGSYSA PFFVTRFRET LFHYSALFDM FDATIERENE HRLNFEKEFY  660
GREAMNVIAC EGADRVERPE TYKQWQVRIS RAGFKMKPLN QEIVSKLRCK VRGGYHKDFV  720
FDEDGKWILQ GWKGRILYAS SCWVPAYHHR HQPTPPPTMN TLLQLQCSTP VNNMLKTVLS  780
PKHRRQLETP QTNQLVYIQN PPEKKGWCSC GCTECNDPTV PHDYFEAVLD YINDMLMGEE  840
DDLMNKSSMY HDCSALQATE KSFYDVLAQK KPIFPSTIEA LDLNFPSTIG VVSSRGKKNR  900
QAPECGGYEQ HRSNKHLAGG WPEEEQMETK EIVTMIDKLL LCPGSNHVGL HDELACCPFD  960
RPVSPLITGK QRRKRSDATK EIVDLKSLLT QCAQAVSSNN KLGVERILKK IRNHSSPRGD  1020
SEERLAHYFA DALDARYAGT GMDLYSNLAL SKIMASDIVK AYQVYVSTCP FKKMSNIYAN  1080
KMIGNLARGS PRLHIIDFGI LYGFQWPCLI QGLSARLGGT PRLRITGIDF PQPGFRPAER  1140
VEETGRRLAD YCKRFNVPFE YHAIARQWDD IKLEDLKINE DEILVVNCLY RLRNVPDETV  1200
LGAIDCPRES VLKLIKMIKP NLFLHGVVNG NYNAPFFLTR FREAYFNFSV LFNMFEAAMN  1260
REDEERLLFE KEVIGREVIN VIACEGTRRI ERPETYKQWQ ARNERAGFTP VPMNGEIMKE  1320
VRAKVKIGFH RDFMVDDDGH WMVQGWKGRV IYAISSWKIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein