PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981046.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 692aa    MW: 78928.5 Da    PI: 6.3156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.34.5e-1093196901374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+++++ + +  +L++++ +++p+gd+++Rla+yf++A++arla+++ e+y+a + ++ s    ++ l a++ +  ++P++++s+
  XP_024981046.1 319 LRDLLTQCAQAITNNNPTSVCDVLKKIQPHCTPYGDSTERLAHYFVKAIEARLAGNGAEIYRAYKLKKIS---AAQILRAHHSYMMACPFHRMSN 410
                     6899************************************************************999999...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN  I +   g++++HiiDf+i +G+QWp++++ L+ Rp+gpp+l+iTg++ p++g   +e++eetg+rLak++++++vpf++n  +a ++++
  XP_024981046.1 411 ILANGSIEKLSRGKQKLHIIDFGILYGFQWPCFIKNLSMRPGGPPMLQITGIDLPQPGfrPAERVEETGNRLAKYCKRFNVPFKYNG-IAMKWDE 504
                     *********************************************************9*****************************.6999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E ++Vn++ +l +++de+v  +s+rd+vL+l+++++P+++v+   +  hn++ +l+rf eal ++s+lfd+++++  r+se+r 
  XP_024981046.1 505 IRIEDLKIDKNELTVVNSINRLRNIHDETVVESSPRDSVLQLIRQINPDMFVLGILNGTHNAPFLLNRFREALFHFSTLFDMFDNTTDRQSEHRF 599
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+e++gre++nvvaceg+ r+er et+++W++r  +aGF++vp+  + ++++ + +r+ + + + v+e+ +++++gWk+r L+++S W+
  XP_024981046.1 600 LYEQEVFGREVMNVVACEGTTRVERPETYKQWQSRNVRAGFRQVPMLRDKVEEVTSKVRMNYHKDFLVDEDGKWMLQGWKGRVLYACSLWK 690
                     **************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    
MLIGCPPSTF LSFQEASIFC IFYTTIDFIN PTCTSCINAC THLLLWINSA SLSIYEPTDS  60
PILFHTSNLK TSPTVLSFLL VFSMDTLYAT AMNNYINSYN HHSVQPSFDR THVNCHDFDP  120
TPMSDQDPSP SVVAEGDGSD NQDHYDSVLK FLNQMLMEED DLQEKPCMYN ECLALQVEAA  180
EKSLYDVLVN NHPASSQEQN LFPACQKIPL DYSAGPTSSE GSSNNFSTVS LIDNGGYHNL  240
NSSRKRSPSG EELRDAKLAM ISEVDSDQPE PYEEDLLLYD HEPQWFSSSE LGKKMNESSK  300
RGRPRGKKNT ITQEIVVDLR DLLTQCAQAI TNNNPTSVCD VLKKIQPHCT PYGDSTERLA  360
HYFVKAIEAR LAGNGAEIYR AYKLKKISAA QILRAHHSYM MACPFHRMSN ILANGSIEKL  420
SRGKQKLHII DFGILYGFQW PCFIKNLSMR PGGPPMLQIT GIDLPQPGFR PAERVEETGN  480
RLAKYCKRFN VPFKYNGIAM KWDEIRIEDL KIDKNELTVV NSINRLRNIH DETVVESSPR  540
DSVLQLIRQI NPDMFVLGIL NGTHNAPFLL NRFREALFHF STLFDMFDNT TDRQSEHRFL  600
YEQEVFGREV MNVVACEGTT RVERPETYKQ WQSRNVRAGF RQVPMLRDKV EEVTSKVRMN  660
YHKDFLVDED GKWMLQGWKG RVLYACSLWK PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-161GRAS family protein