PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981156.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 294aa    MW: 32460.5 Da    PI: 7.8827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67.1e-144084147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_024981156.1 40 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 84
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MNNLNKNSTQ SPSPSMAANS TPTDSSGKKV RKPYTITKSR ESWTDEEHDK FLEALQLFDR  60
DWKKIEDFVG SKTVIQIRSH AQKYFLKVQK NGSIAHVPPP RPKRKATHPY PQKASKNVLL  120
PLQASIGYPS SLTALAPGYS PWDDTSMLIS PSGGIIPSQD EYDLHGFEAD IGSKEAGRIS  180
NISTSGIGSS SREMPSSELA NQGEQGSILP GIPDFSEVYS FIGSVFDPET KGHVQKLKEM  240
DPINFETVLL LMRNLTMNLS SPDFEPMRKV LSSYEFNSKN VGVSAGNVYE QSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-123MYB_related family protein