PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981169.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 258aa    MW: 29617.7 Da    PI: 4.7327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l+d+++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_024981169.1 14 KGPWTHQEDRILIDYINLHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.45.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
   XP_024981169.1  67 RGNFSREEEETIIQLHTAMGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MVRAPCCEKM GLKKGPWTHQ EDRILIDYIN LHGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEETIIQ LHTAMGNRWS AIAARLPGRT DNEIKNVWHT HLKKRVNPNH  120
TTEPTSNFEE KQEESKEEDE QTGARSSSSP LETNSTSSTD QTSYNQIDSP QPSCTEISSV  180
TTSTNDNVYN EEMILENFPE MDDEFWSEVF SGGNSDEFPL VHENIGQLQS GCGQESILHD  240
DMDFWFNVFT RGEELPQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-76MYB family protein