PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981299.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 255aa    MW: 28789.3 Da    PI: 8.2063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-082467344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a +++ ++   +W ++a++++ g+t  ++   +
   XP_024981299.1 24 VWSPVENKLFENALAKFDKDtpdRWQKVAEMVP-GKTVADVLQQY 67
                     6********************************.***99986665 PP
2Myb_DNA-binding47.54.2e-15127171347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_024981299.1 127 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 171
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MKWETVILSN SSSWMMEDSI KSTVWSPVEN KLFENALAKF DKDTPDRWQK VAEMVPGKTV  60
ADVLQQYKEL EDDVTSIEAG FYPKYGYNCS TSPFTLEWGN SNGCVKRSSA AAPGLRPLEQ  120
ERKKGVPWTE EEHKLFLLGL KKYGKGDWRN ISRNFVVTRT PTQVASHAQK YFIRQLSGGK  180
DKRRASIHDI TTVNLTENHL TSQDQWYPTT TETHGDLFMS PRYGGNSFAA GGGAGLHEPY  240
GGPQNLVFQM QYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-75MYB_related family protein