PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981431.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 261aa MW: 30202 Da PI: 6.3019

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.6e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+++G ++W+ Ia+ g++R++k+c++rw +yl XP_024981431.1 16 KGPWTEQEDVQLVSYVNMFGDRRWDFIAKVSGLRRSGKSCRLRWVNYL 63 79********************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ ++++++ ++G++ W++Iar+++ gRt++++k++w+++ XP_024981431.1 69 RGKMTPQEERRILELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTH 113 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGKEDDMMMM TTTMRKGPWT EQEDVQLVSY VNMFGDRRWD FIAKVSGLRR SGKSCRLRWV 60 NYLHPGLKRG KMTPQEERRI LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTHTRKNAQE 120 KKRVLSPSSS FSNSSSYSSI CTSNPTIDST PMTEFNQRSF YDTSGLEMVV ITKGESDSNT 180 MKSTTTSLND VSEMQDGYNS MDEIWKDIDL LEDDGITPVF GTCSEIAPSP MWDYSLNALW 240 MIDGLEETES NMFFPDNKRA I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	6e-75	MYB family protein