PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981432.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 236aa    MW: 27184.5 Da    PI: 8.7729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-174488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T++E+ ++++++ ++G++ W++Iar+++ gRt++++k++w+++
   XP_024981432.1 44 RGKMTPQEERRILELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTH 88
                     89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGFHSKSFRF EGGGRYKNEK IGLRRSGKSC RLRWVNYLHP GLKRGKMTPQ EERRILELHS  60
KWGNRWSRIA RKLPGRTDNE IKNYWRTHTR KNAQEKKRVL SPSSSFSNSS SYSSICTSNP  120
TIDSTPMTEF NQRSFYDTSG LEMVVITKGE SDSNTMKSTT TSLNDVSEMQ DGYNSMDEIW  180
KDIDLLEDDG ITPVFGTCSE IAPSPMWDYS LNALWMIDGL EETESNMFFP DNKRAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.43e-62MYB_related family protein