PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981438.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 546aa MW: 60803.6 Da PI: 6.9936

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.5e-32	208	265	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkk+e+++ d++++ei+Y+g+Hnh+k XP_024981438.1 208 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCSMKKKLETNS-DGQITEIVYKGNHNHPK 265 7*************************************9.*************85 PP
2	WRKY	105.3	3.3e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d + v++tYeg+Hnh+ XP_024981438.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERASQDLRSVITTYEGKHNHD 442 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MTSSASIDAP SNTSNSFSFM SSYSDKPPPT RTGGLAARIA ERIGSGVPKF KSIPPPSLPI 60 SPPAVSPSSY FSIPPGLSPA ELLDSPVLLS SSNILPSPTT GSFPFHAFNW KNLSNNIQNQ 120 EQSIKKEQKS FSDFSFQPQS NSNHATEQPW DHQKPRDEDE QAFIQSEHPP LMQCFSPEIS 180 TIQTDSNSSF QSGYANNFNN QSTQKKSEDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCSM 240 KKKLETNSDG QITEIVYKGN HNHPKPQSTR RSSSSSASNT LQTGQVSGNH EFQDYPDQSY 300 ASHGSGQFDS VATPENSSLS VGDDEFDRSS CQRSRSGGDE LDEDEPEAKR WRASENEGIS 360 MIGGTRTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSPGCSVRKH 420 VERASQDLRS VITTYEGKHN HDVPMARGSG HRLPPTTMAI KPTTVSHYQP NNSMVDPIRG 480 SRRPPSSEDQ APFTLEMLQS PGSFKFSRFE NALRANYVDQ QQDSERAFSG AKDEPRDDFF 540 LESLLF

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MTSSASIDAP SNTSNSFSFM SSYSDKPPPT RTGGLAARIA ERIGSGVPKF KSIPPPSLPI  60
SPPAVSPSSY FSIPPGLSPA ELLDSPVLLS SSNILPSPTT GSFPFHAFNW KNLSNNIQNQ  120
EQSIKKEQKS FSDFSFQPQS NSNHATEQPW DHQKPRDEDE QAFIQSEHPP LMQCFSPEIS  180
TIQTDSNSSF QSGYANNFNN QSTQKKSEDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCSM  240
KKKLETNSDG QITEIVYKGN HNHPKPQSTR RSSSSSASNT LQTGQVSGNH EFQDYPDQSY  300
ASHGSGQFDS VATPENSSLS VGDDEFDRSS CQRSRSGGDE LDEDEPEAKR WRASENEGIS  360
MIGGTRTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSPGCSVRKH  420
VERASQDLRS VITTYEGKHN HDVPMARGSG HRLPPTTMAI KPTTVSHYQP NNSMVDPIRG  480
SRRPPSSEDQ APFTLEMLQS PGSFKFSRFE NALRANYVDQ QQDSERAFSG AKDEPRDDFF  540
LESLLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-107	WRKY family protein