PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981604.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 493aa MW: 55708 Da PI: 5.8358

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.3e-12	442	492	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 ++rWTt E++ l ++ ++G+g+Wk+I +t + Rt+ ++k++w++++ XP_024981604.1 442 KKRWTTIEEDTLRTGILKYGKGNWKLILSTYRdifEDRTEVDLKDKWRNLM 492 68***********************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MDIDVSGWIL EFLLRQNSVD DRSLNDLIRV LPLPNNNPRL KKSLLLRKIE SDIEKGTISE 60 RTFEFLEQIE ELDVKEGEAE VSEAMKAAYC TVAMHCTVKF IEESAGDSKE EYASTVRRIW 120 GGRIREMERS EVAERVGLVQ DDLLLWMNDI EAGVLDADAC ENVLTMVKGL DVLEVLRGYV 180 NEAKEKMGPS FLELACETIL NDDALSKTMG LDEGAELNNQ IKDDAPTVAP AITQNVDANA 240 DNNVKGNEAL REPVLPRHKH VATRCSRGSG RETHRGAKIV DPMETFRNRY DSIPTPQVKK 300 VQKDLKTSSF ELRAVVQDPL LDALRYAESF KASTSGENMA QDHVVGNSNR INVEAPSSSN 360 DRNCKASEAN GDDGFCRDQN KRPKPSLMER NSTAHTLEWS DSIDSSSKDG SPARPHLPSP 420 KKRAVSPLRI YKMEKLARKR KKKRWTTIEE DTLRTGILKY GKGNWKLILS TYRDIFEDRT 480 EVDLKDKWRN LMR

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MDIDVSGWIL EFLLRQNSVD DRSLNDLIRV LPLPNNNPRL KKSLLLRKIE SDIEKGTISE  60
RTFEFLEQIE ELDVKEGEAE VSEAMKAAYC TVAMHCTVKF IEESAGDSKE EYASTVRRIW  120
GGRIREMERS EVAERVGLVQ DDLLLWMNDI EAGVLDADAC ENVLTMVKGL DVLEVLRGYV  180
NEAKEKMGPS FLELACETIL NDDALSKTMG LDEGAELNNQ IKDDAPTVAP AITQNVDANA  240
DNNVKGNEAL REPVLPRHKH VATRCSRGSG RETHRGAKIV DPMETFRNRY DSIPTPQVKK  300
VQKDLKTSSF ELRAVVQDPL LDALRYAESF KASTSGENMA QDHVVGNSNR INVEAPSSSN  360
DRNCKASEAN GDDGFCRDQN KRPKPSLMER NSTAHTLEWS DSIDSSSKDG SPARPHLPSP  420
KKRAVSPLRI YKMEKLARKR KKKRWTTIEE DTLRTGILKY GKGNWKLILS TYRDIFEDRT  480
EVDLKDKWRN LMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	421	443	KKRAVSPLRIYKMEKLARKRKKK
2	438	442	RKRKK
3	438	444	RKRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	2e-16	MYB_related family protein