PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981605.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 491aa MW: 55536.8 Da PI: 5.8358

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.3e-12	440	490	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 ++rWTt E++ l ++ ++G+g+Wk+I +t + Rt+ ++k++w++++ XP_024981605.1 440 KKRWTTIEEDTLRTGILKYGKGNWKLILSTYRdifEDRTEVDLKDKWRNLM 490 68***********************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MDIDVSGWIL EFLLRQNSVD DRSLNDLIRV LPLPNNNPRL KKSLLLRKIE SDIEKGTISE 60 RTFEFLEQIE ELDVKEGEAE VSEAMKAAYC TVAMHCTVKF IEESAGDSKE EYASTVRRIW 120 GGRIREMERS EVAERVGLVQ DDLLLWMNDI EAGVLDADAC ENVLTMVKGL DVLEVLRGYV 180 NEAKEKMGPS FLELACETIL NDDALSKTMG LDEGAELNNQ IKDDAPTVAP AITQNVDANA 240 DNNVKEALRE PVLPRHKHVA TRCSRGSGRE THRGAKIVDP METFRNRYDS IPTPQVKKVQ 300 KDLKTSSFEL RAVVQDPLLD ALRYAESFKA STSGENMAQD HVVGNSNRIN VEAPSSSNDR 360 NCKASEANGD DGFCRDQNKR PKPSLMERNS TAHTLEWSDS IDSSSKDGSP ARPHLPSPKK 420 RAVSPLRIYK MEKLARKRKK KRWTTIEEDT LRTGILKYGK GNWKLILSTY RDIFEDRTEV 480 DLKDKWRNLM R

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MDIDVSGWIL EFLLRQNSVD DRSLNDLIRV LPLPNNNPRL KKSLLLRKIE SDIEKGTISE  60
RTFEFLEQIE ELDVKEGEAE VSEAMKAAYC TVAMHCTVKF IEESAGDSKE EYASTVRRIW  120
GGRIREMERS EVAERVGLVQ DDLLLWMNDI EAGVLDADAC ENVLTMVKGL DVLEVLRGYV  180
NEAKEKMGPS FLELACETIL NDDALSKTMG LDEGAELNNQ IKDDAPTVAP AITQNVDANA  240
DNNVKEALRE PVLPRHKHVA TRCSRGSGRE THRGAKIVDP METFRNRYDS IPTPQVKKVQ  300
KDLKTSSFEL RAVVQDPLLD ALRYAESFKA STSGENMAQD HVVGNSNRIN VEAPSSSNDR  360
NCKASEANGD DGFCRDQNKR PKPSLMERNS TAHTLEWSDS IDSSSKDGSP ARPHLPSPKK  420
RAVSPLRIYK MEKLARKRKK KRWTTIEEDT LRTGILKYGK GNWKLILSTY RDIFEDRTEV  480
DLKDKWRNLM R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	441	KKRAVSPLRIYKMEKLARKRKKK
2	436	440	RKRKK
3	436	442	RKRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	2e-16	MYB_related family protein