PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981644.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 632aa MW: 70200.2 Da PI: 6.4653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6e-08	270	290	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_024981644.1 270 PCPEFRK-GSCRHGDACEYAHG 290 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRLVVDE EGYDVDDSGL WYGRSIGSKK 60 MSLEERTPLM IASMFASKQV LKFILGLNRV DVNKACGSDR ATALHMAVSG GSSSSIEVVK 120 LLIDASADTS CLDVNGNRPI DLIPLVFGSS FNSKRKFLEL MLNGYAHGEE LCLLNVLTDD 180 HIHIHGDERK DVPNLISSRE GTEKKEYPVD LSLPDMKNGI YNTDEFRMYT FKIKPCSRAY 240 SHDWTECPFV HPGENARRRD PQKYHYSCVP CPEFRKGSCR HGDACEYAHG IFECWLHPAQ 300 YRTRLCKDEV GCSRKVCFFA HKTEELRPLH PSTGSAVLSP RPMSLKLSDM SSISPFSLGS 360 PSIMIPPSST PPITPGASSP GGGPLWLNQP SPTLKVLGSR FKTTPNSQDL DFEAEMIRVD 420 RYRQQQLMDE FAGLSPPSSW NNNGFLGDRS EDYNISTGSN HKSLELLSSA DHTILSQLQG 480 VSLESRIAQL HQNMNYSGLP SSPLRMSSPS SLRPNQIMHS RSAAFAKRSQ SFIDRGTVNR 540 QSGFPSPVLS SMAPSMHSDW GSPDGKLNWG IQKDELNKLR KSASFGVRRS PDSLLIPNNQ 600 EPDSHVNNVT FDEEQFPPWV EQLYMEQEQL VA

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRLVVDE EGYDVDDSGL WYGRSIGSKK  60
MSLEERTPLM IASMFASKQV LKFILGLNRV DVNKACGSDR ATALHMAVSG GSSSSIEVVK  120
LLIDASADTS CLDVNGNRPI DLIPLVFGSS FNSKRKFLEL MLNGYAHGEE LCLLNVLTDD  180
HIHIHGDERK DVPNLISSRE GTEKKEYPVD LSLPDMKNGI YNTDEFRMYT FKIKPCSRAY  240
SHDWTECPFV HPGENARRRD PQKYHYSCVP CPEFRKGSCR HGDACEYAHG IFECWLHPAQ  300
YRTRLCKDEV GCSRKVCFFA HKTEELRPLH PSTGSAVLSP RPMSLKLSDM SSISPFSLGS  360
PSIMIPPSST PPITPGASSP GGGPLWLNQP SPTLKVLGSR FKTTPNSQDL DFEAEMIRVD  420
RYRQQQLMDE FAGLSPPSSW NNNGFLGDRS EDYNISTGSN HKSLELLSSA DHTILSQLQG  480
VSLESRIAQL HQNMNYSGLP SSPLRMSSPS SLRPNQIMHS RSAAFAKRSQ SFIDRGTVNR  540
QSGFPSPVLS SMAPSMHSDW GSPDGKLNWG IQKDELNKLR KSASFGVRRS PDSLLIPNNQ  600
EPDSHVNNVT FDEEQFPPWV EQLYMEQEQL VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-172	C3H family protein