PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981645.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 606aa MW: 67338.8 Da PI: 6.2051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.7e-08	244	264	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_024981645.1 244 PCPEFRK-GSCRHGDACEYAHG 264 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRLVVDE EGYDVDDSGL WYGRSIGSKK 60 MSLEERTPLM IASMATALHM AVSGGSSSSI EVVKLLIDAS ADTSCLDVNG NRPIDLIPLV 120 FGSSFNSKRK FLELMLNGYA HGEELCLLNV LTDDHIHIHG DERKDVPNLI SSREGTEKKE 180 YPVDLSLPDM KNGIYNTDEF RMYTFKIKPC SRAYSHDWTE CPFVHPGENA RRRDPQKYHY 240 SCVPCPEFRK GSCRHGDACE YAHGIFECWL HPAQYRTRLC KDEVGCSRKV CFFAHKTEEL 300 RPLHPSTGSA VLSPRPMSLK LSDMSSISPF SLGSPSIMIP PSSTPPITPG ASSPGGGPLW 360 LNQPSPTLKV LGSRFKTTPN SQDLDFEAEM IRVDRYRQQQ LMDEFAGLSP PSSWNNNGFL 420 GDRSEDYNIS TGSNHKSLEL LSSADHTILS QLQGVSLESR IAQLHQNMNY SGLPSSPLRM 480 SSPSSLRPNQ IMHSRSAAFA KRSQSFIDRG TVNRQSGFPS PVLSSMAPSM HSDWGSPDGK 540 LNWGIQKDEL NKLRKSASFG VRRSPDSLLI PNNQEPDSHV NNVTFDEEQF PPWVEQLYME 600 QEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MCTSDLVVGL SNGQKLSNIS ILLELSAADD LEGFRLVVDE EGYDVDDSGL WYGRSIGSKK  60
MSLEERTPLM IASMATALHM AVSGGSSSSI EVVKLLIDAS ADTSCLDVNG NRPIDLIPLV  120
FGSSFNSKRK FLELMLNGYA HGEELCLLNV LTDDHIHIHG DERKDVPNLI SSREGTEKKE  180
YPVDLSLPDM KNGIYNTDEF RMYTFKIKPC SRAYSHDWTE CPFVHPGENA RRRDPQKYHY  240
SCVPCPEFRK GSCRHGDACE YAHGIFECWL HPAQYRTRLC KDEVGCSRKV CFFAHKTEEL  300
RPLHPSTGSA VLSPRPMSLK LSDMSSISPF SLGSPSIMIP PSSTPPITPG ASSPGGGPLW  360
LNQPSPTLKV LGSRFKTTPN SQDLDFEAEM IRVDRYRQQQ LMDEFAGLSP PSSWNNNGFL  420
GDRSEDYNIS TGSNHKSLEL LSSADHTILS QLQGVSLESR IAQLHQNMNY SGLPSSPLRM  480
SSPSSLRPNQ IMHSRSAAFA KRSQSFIDRG TVNRQSGFPS PVLSSMAPSM HSDWGSPDGK  540
LNWGIQKDEL NKLRKSASFG VRRSPDSLLI PNNQEPDSHV NNVTFDEEQF PPWVEQLYME  600
QEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-155	C3H family protein