PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981668.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 348aa MW: 39056.7 Da PI: 4.9122

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++ +d+++ +G g+W++ ++ g+ R++k+c++rw +yl XP_024981668.1 14 RGRWTAEEDKIMIDYIQTHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	49.9	7.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++ + ++++ lG++ W++Ia++++ gRt++++k++w+++l XP_024981668.1 67 RGNISKEEEDVITKLHASLGNR-WSLIAAHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDKIMIDYIQ THGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLRRGNI SKEEEDVITK LHASLGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIIPSR 120 RLPVPSMPDL SPHKRKGRTS RSTMKINKTY TSFSNANNKK LMTDPTVVCA NKTTSWDAPP 180 TLISPVNVPI TPLTPCTEKE SIHVYLDPTC SSSYQHSDDG DMMVDDDGMN YFIENGALLL 240 EDVVEEEKIT QDATSNGGKE GKEIESEKGE LVGGNRSSSS TDLLNVGDGK QVVDGEWEWN 300 WNWNFDDEEV GLGLGVGEEE EDIILSWPWQ ESELASTTTD NIAAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDKIMIDYIQ THGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLRRGNI SKEEEDVITK LHASLGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIIPSR  120
RLPVPSMPDL SPHKRKGRTS RSTMKINKTY TSFSNANNKK LMTDPTVVCA NKTTSWDAPP  180
TLISPVNVPI TPLTPCTEKE SIHVYLDPTC SSSYQHSDDG DMMVDDDGMN YFIENGALLL  240
EDVVEEEKIT QDATSNGGKE GKEIESEKGE LVGGNRSSSS TDLLNVGDGK QVVDGEWEWN  300
WNWNFDDEEV GLGLGVGEEE EDIILSWPWQ ESELASTTTD NIAAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-72	MYB family protein