PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981679.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 365aa MW: 42299.4 Da PI: 6.025

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71	1.6e-22	173	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ +s++ rsYYrCt++ gC ++k+v++ +++p v +itY +H+++ XP_024981679.1 173 DDGHAWRKYGQKKILESKHERSYYRCTYKhdqGCLATKQVQKMEDEPPVYKITYMRSHTCK 233 8*************************99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MESPIWPESL PINRKKAIQE LTQGQEWTDK LREILQQSEN IESDSASLDG VVDRILGMFD 60 NTLSIMGSRT SNEPLQFLTN YLQTSYSFDE QKSKTSDLQS LCSLELDERK LRKSDETFSL 120 QTSYLESPRS SDENKSKKYD ETSRMVIPVK MKRGCHKRKT SWASTQITSI LTDDGHAWRK 180 YGQKKILESK HERSYYRCTY KHDQGCLATK QVQKMEDEPP VYKITYMRSH TCKNLQRAPQ 240 IILDSVDPRD TSILLNFKAK ELTGNKQVNH FFQPMKHEPN EGSPSLGNQR DNQSTPSDDC 300 LLWDLIMKVP QVPLESVSMS VGLDHEIYLW SEHGDMTSSY SSMASTERHE MDYMFESNDF 360 KDFSF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MESPIWPESL PINRKKAIQE LTQGQEWTDK LREILQQSEN IESDSASLDG VVDRILGMFD  60
NTLSIMGSRT SNEPLQFLTN YLQTSYSFDE QKSKTSDLQS LCSLELDERK LRKSDETFSL  120
QTSYLESPRS SDENKSKKYD ETSRMVIPVK MKRGCHKRKT SWASTQITSI LTDDGHAWRK  180
YGQKKILESK HERSYYRCTY KHDQGCLATK QVQKMEDEPP VYKITYMRSH TCKNLQRAPQ  240
IILDSVDPRD TSILLNFKAK ELTGNKQVNH FFQPMKHEPN EGSPSLGNQR DNQSTPSDDC  300
LLWDLIMKVP QVPLESVSMS VGLDHEIYLW SEHGDMTSSY SSMASTERHE MDYMFESNDF  360
KDFSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	6e-34	WRKY family protein