PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981680.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 364aa MW: 42143.2 Da PI: 5.8403

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61.5	1.5e-19	173	232	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ +s++ sYYrCt++ gC ++k+v++ +++p v +itY +H+++ XP_024981680.1 173 DDGHAWRKYGQKKILESKH-ESYYRCTYKhdqGCLATKQVQKMEDEPPVYKITYMRSHTCK 232 8**************98.69**99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MESPIWPESL PINRKKAIQE LTQGQEWTDK LREILQQSEN IESDSASLDG VVDRILGMFD 60 NTLSIMGSRT SNEPLQFLTN YLQTSYSFDE QKSKTSDLQS LCSLELDERK LRKSDETFSL 120 QTSYLESPRS SDENKSKKYD ETSRMVIPVK MKRGCHKRKT SWASTQITSI LTDDGHAWRK 180 YGQKKILESK HESYYRCTYK HDQGCLATKQ VQKMEDEPPV YKITYMRSHT CKNLQRAPQI 240 ILDSVDPRDT SILLNFKAKE LTGNKQVNHF FQPMKHEPNE GSPSLGNQRD NQSTPSDDCL 300 LWDLIMKVPQ VPLESVSMSV GLDHEIYLWS EHGDMTSSYS SMASTERHEM DYMFESNDFK 360 DFSF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MESPIWPESL PINRKKAIQE LTQGQEWTDK LREILQQSEN IESDSASLDG VVDRILGMFD  60
NTLSIMGSRT SNEPLQFLTN YLQTSYSFDE QKSKTSDLQS LCSLELDERK LRKSDETFSL  120
QTSYLESPRS SDENKSKKYD ETSRMVIPVK MKRGCHKRKT SWASTQITSI LTDDGHAWRK  180
YGQKKILESK HESYYRCTYK HDQGCLATKQ VQKMEDEPPV YKITYMRSHT CKNLQRAPQI  240
ILDSVDPRDT SILLNFKAKE LTGNKQVNHF FQPMKHEPNE GSPSLGNQRD NQSTPSDDCL  300
LWDLIMKVPQ VPLESVSMSV GLDHEIYLWS EHGDMTSSYS SMASTERHEM DYMFESNDFK  360
DFSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-31	WRKY family protein