PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981696.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 349aa MW: 38795.8 Da PI: 10.1725

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.4e-31	283	340	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ XP_024981696.1 283 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDSAMLIVTYEGEHNHT 340 9**********************9988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEEVEAANKA AIESCHRILN LLAQPQDHVQ SKNLMVQTGD AVHRFKKVVS LLDDGLGHPR 60 VRKFKKIQNL IPQNILLDNT IIQEPPKPLQ LLLTAPPANH NQTHPIQEGG GSNAVKNTLS 120 LGNHPLSSIV KNPNPISQKN PNPSSNYQFL QNHHHQQQQT QLQLKQQAEM IYRRSNSGLN 180 LTFDSSVATP TISSNRSFMS SLSIEGSVTT LDGSSFQLIG STSRSTDQAT YQHKPRCSAR 240 GDDESAKCGS SGRCHCSKKR KHRIKRSIKV PAVSNKLADI PPDEYSWRKY GQKPIKGSPH 300 PRGYYKCSSM RGCPARKHVE RCLDDSAMLI VTYEGEHNHT RLPSQSANT

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEEVEAANKA AIESCHRILN LLAQPQDHVQ SKNLMVQTGD AVHRFKKVVS LLDDGLGHPR  60
VRKFKKIQNL IPQNILLDNT IIQEPPKPLQ LLLTAPPANH NQTHPIQEGG GSNAVKNTLS  120
LGNHPLSSIV KNPNPISQKN PNPSSNYQFL QNHHHQQQQT QLQLKQQAEM IYRRSNSGLN  180
LTFDSSVATP TISSNRSFMS SLSIEGSVTT LDGSSFQLIG STSRSTDQAT YQHKPRCSAR  240
GDDESAKCGS SGRCHCSKKR KHRIKRSIKV PAVSNKLADI PPDEYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RCLDDSAMLI VTYEGEHNHT RLPSQSANT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-97	WRKY family protein