PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981697.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 204aa MW: 22581.6 Da PI: 7.7513

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.2e-39	10	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar++dPvyG+v++i++lqqq+++l+++l XP_024981697.1 10 PCGACKFLRRKCATDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQVACLQTQL 104 7***********************99***************************************************************** PP DUF260 95 allkeel 101 ++k+++ XP_024981697.1 105 MQTKAQI 111 9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MATAGGTGSP CGACKFLRRK CATDCIFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHVP 60 VADRCEAVVT IAYEAQARIK DPVYGCVAHI FALQQQVACL QTQLMQTKAQ IAQGIFDSNN 120 QWAGSMAAYQ NYPNFTTIMN GNISPQSSLE SIDHNNEGMG VQEKQSRDDH YHDISFQHIY 180 NNKKRPFPSD LGELQELAVR MMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-78	LBD family protein