PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981700.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 386aa MW: 44148.5 Da PI: 7.3238

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.8	9.1e-23	169	229	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ +s++ rsYYrCt++ gC ++k+v++ +++p + +itY +H+++ XP_024981700.1 169 DDGHAWRKYGQKKILESKHERSYYRCTYKldqGCLATKQVQKIDNEPPLYKITYMRSHTCK 229 8*************************9999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MESPTWPESL PINRKKAIQE LTQGQEWTDR LREILQRSEN IEADPTSLDG IVEQILGMFD 60 NTLSIIGSWS SNERFQLPAS YLQKSRKPDE PFLLQTSYLQ SFCSSDEQIS RKPIADDPLR 120 LQSSYLESLH KSRKPGESTK MIIPMKIKRG CYSRKNSWTS TQVTSVLTDD GHAWRKYGQK 180 KILESKHERS YYRCTYKLDQ GCLATKQVQK IDNEPPLYKI TYMRSHTCKN LQRASQIILD 240 SRDPTDTSIL LNFEAKGITG KKQVSPHFQT MKHDPEDGSL SLGHWRDNGS IPSNNYLSWN 300 LNTQVSQIPL ESISMSIRLD HEDMVSSCVY LGSEHGDMTS SEAYSSMASP QRHPYASSEA 360 YSSMASTQRN EMDHMLGRND FNGFSF

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MESPTWPESL PINRKKAIQE LTQGQEWTDR LREILQRSEN IEADPTSLDG IVEQILGMFD  60
NTLSIIGSWS SNERFQLPAS YLQKSRKPDE PFLLQTSYLQ SFCSSDEQIS RKPIADDPLR  120
LQSSYLESLH KSRKPGESTK MIIPMKIKRG CYSRKNSWTS TQVTSVLTDD GHAWRKYGQK  180
KILESKHERS YYRCTYKLDQ GCLATKQVQK IDNEPPLYKI TYMRSHTCKN LQRASQIILD  240
SRDPTDTSIL LNFEAKGITG KKQVSPHFQT MKHDPEDGSL SLGHWRDNGS IPSNNYLSWN  300
LNTQVSQIPL ESISMSIRLD HEDMVSSCVY LGSEHGDMTS SEAYSSMASP QRHPYASSEA  360
YSSMASTQRN EMDHMLGRND FNGFSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	4e-33	WRKY family protein