PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981725.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 173aa MW: 19180.9 Da PI: 6.649

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.4	6.9e-45	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_024981725.1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024981725.1 102 VAQAE 106 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MGSGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNVSK MLQELPVHQR 60 ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEPELPT 120 THHPTMVDCD AKSLLLSGSN TSDFSDQMPQ FLSYTSSNNN VIQDPLKRES LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-87	LBD family protein