PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981729.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 280aa    MW: 31211.3 Da    PI: 6.6248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-06184228655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR++i ++  eL +l+P         ++s ae+ + A +YIk Lq
  XP_024981729.1 184 SMAARVRRRKISQKTLELGKLVPGgH------RMSTAEMFQAALKYIKFLQ 228
                     67889******************955......9*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MALPFYSNWP TFRQAHHHAT AVPLPQPPPE HLPFHDNFAL SDTCINPMLH LNRHFSGSYN  60
GNLAFNNGIK YPTLSSSYNS LTTQQHLLNN PPLPELSQIS SFTHEWEWPL VPNVCDHDQF  120
FSLNPMVELP PLPEIYPDCG SDTLMPPSYD GGQGNDNIME VEERSNVQVK KQNGGGGRSL  180
SAQSMAARVR RRKISQKTLE LGKLVPGGHR MSTAEMFQAA LKYIKFLQAQ VGVLQLLASS  240
HVQGPNEELQ ALVTSPSVQE KLYAAEKCIV TQALVHDHQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-17bHLH family protein