PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981740.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 152aa    MW: 17323.7 Da    PI: 8.9719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-115979626
                    -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                    C++f rtG C+yGd+Ck+ H+
  XP_024981740.1 59 CNRFIRTGSCPYGDSCKYLHP 79
                    ********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MPLGKYYCDY CDKQFQDTPF HRKRHIQGLH HQKAKALWYA SIPRDPNQIS LESSAIGVCN  60
RFIRTGSCPY GDSCKYLHPN RNLQNRNVQG FAATNSMETQ MPSFQRSQPI ERSSLPGGMV  120
VDRMGVMLEN LPPSLRPPPE NGYPPLPFVD WG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-46C3H family protein