PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981888.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 437aa MW: 48409.9 Da PI: 8.1836

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	4e-17	83	142	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_024981888.1 83 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 142 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MATASSSDPV MKSEGSGSGS GGETSEAAAA TMVGVAAVVG RGNNYQQQLM VKYRLKKSKK 60 ERGCTAKERI SKMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL 120 GAYDDEEAAA RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQNLSREDYL ASLRRKGSGF 180 SRGTSKCRGI SSTRWDSPLG RIAGSDYHNC MHHGDDATTE SEYVGGVCMD RKIDLTPFIK 240 WWGPNKSRQS ESHGKSSEET DHGSSEDVES ASEWVTQPTE PYQLPRLGGK QHKRSSVSAM 300 SILSRSPAFK RLQEKALKKE EKDVENDENE NKNSINKMDY GKAVEKAGHD AASEGFGVAL 360 GMEAGELPLQ RNTYPLAPFL SAPLLTNYNT IDPLTDPILW SSLVPALRPR SSQPMEATKT 420 ETSSDYTFFQ QEDLLPT

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MATASSSDPV MKSEGSGSGS GGETSEAAAA TMVGVAAVVG RGNNYQQQLM VKYRLKKSKK  60
ERGCTAKERI SKMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL  120
GAYDDEEAAA RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQNLSREDYL ASLRRKGSGF  180
SRGTSKCRGI SSTRWDSPLG RIAGSDYHNC MHHGDDATTE SEYVGGVCMD RKIDLTPFIK  240
WWGPNKSRQS ESHGKSSEET DHGSSEDVES ASEWVTQPTE PYQLPRLGGK QHKRSSVSAM  300
SILSRSPAFK RLQEKALKKE EKDVENDENE NKNSINKMDY GKAVEKAGHD AASEGFGVAL  360
GMEAGELPLQ RNTYPLAPFL SAPLLTNYNT IDPLTDPILW SSLVPALRPR SSQPMEATKT  420
ETSSDYTFFQ QEDLLPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-135	AP2 family protein