PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981903.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-YB

Protein Properties

Length: 192aa MW: 21668.2 Da PI: 8.0781

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.2	2e-52	34	130	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 v+eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd++wa+ +lGf+dy+eplk yl+k re++g XP_024981903.1 34 VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDHCRKEKRKTVNGDDVCWAMLNLGFDDYAEPLKRYLHKIREFDG 128 58********************************************************************************************9 PP NF-YB 96 ek 97 e+ XP_024981903.1 129 ER 130 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MVHNIGSNNS GRQVLNFTYD ATTSATQEID HGVVKEQDRL LPIANVGRIM KQILPPNAKI 60 SKEAKETMQE CVSEFISFVT GEASDHCRKE KRKTVNGDDV CWAMLNLGFD DYAEPLKRYL 120 HKIREFDGER ANQNNKVGSS SSNEEIKDYL PNPHQETSSN YRSAGNQAPR KATVSTSPNL 180 FKFTVIDKRN IF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	9e-63	NF-YB family protein