PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981956.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 381aa MW: 42974.6 Da PI: 7.279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	220	239	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_024981956.1 220 FSCPVCFKTFNRYNNMQMHM 239 89*****************9 PP
2	zf-C2H2	14.4	0.00011	304	326	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_024981956.1 304 FMCRKCGKAFAVRGDWRTHEKNC 326 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MTDPSYSSNL YSQWFRIDQF SNSCPTNLPH HVQTSIHYQY PRSYYYNNFQ SSSYSNTRTT 60 NSFNIHPSSS VINQHPTAPP SPPLREALPL LSLSPSRKHE DYYHHQQQPS CSTTTHQDMD 120 VEGDDVEEED DETAVTVALH IGLPNASAAD LASLISNSSN SSSTTTTTTT EIMVPSNINN 180 KSKDGDGDEG CLGYSPISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW 240 GHGSQYRKGP ESLRGTQPTG MLKLPCYCCA PGCRNNIDHP RSRPLKDFRT LQTHYKRKHG 300 IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGHGHAAYGI 360 NGFEEDDEPA SEIEQDDDGN S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MTDPSYSSNL YSQWFRIDQF SNSCPTNLPH HVQTSIHYQY PRSYYYNNFQ SSSYSNTRTT  60
NSFNIHPSSS VINQHPTAPP SPPLREALPL LSLSPSRKHE DYYHHQQQPS CSTTTHQDMD  120
VEGDDVEEED DETAVTVALH IGLPNASAAD LASLISNSSN SSSTTTTTTT EIMVPSNINN  180
KSKDGDGDEG CLGYSPISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW  240
GHGSQYRKGP ESLRGTQPTG MLKLPCYCCA PGCRNNIDHP RSRPLKDFRT LQTHYKRKHG  300
IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGHGHAAYGI  360
NGFEEDDEPA SEIEQDDDGN S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-139	C2H2 family protein