PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981996.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 511aa MW: 55475.9 Da PI: 6.8331

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.5e-17	173	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_024981996.1 173 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 222 78*****************......55**********************997 PP
2	AP2	39.8	1.1e-12	265	315	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ + +g XP_024981996.1 265 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEADAARAYDKAAIECNG 315 89******.7**5553..2.26******99********98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MLDLNLNFLN EEETTAFRDV EESGTSNSSV LNADCVTSSN AGDGDDDSSS AGGAGESFSC 60 FNFDILKVGD AGVQSGNNYD EDRRSQVVTQ SEFVTRHLFP VGHGGGGGGG GGGGGGDEPG 120 RLNQAQQANS LLLCPNTNEL QEMRLVQVQQ QKATVQPNPV GKKSRRGPRS RSSQYRGVTF 180 YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEDMKQ 240 MKNFSKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEA 300 DAARAYDKAA IECNGREAVT NFEASTYEGN TLPAPRHGSE HDLNLRLGIS TPSLGEGSSR 360 NENLEQTHLN YVHDTRRLQL ENPVSTTVGI TALKGLPLTS GHPTPWNGVY PTFVPNYEGS 420 ATNTRTIAGS SQGPPNWAWQ LHGHNHIPTA ASSGFSAPAA TTAVMTSGSH YSRDTISMAA 480 LNSHYSPATT ATSSSQYYYQ IRPPPPPPPP P

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MLDLNLNFLN EEETTAFRDV EESGTSNSSV LNADCVTSSN AGDGDDDSSS AGGAGESFSC  60
FNFDILKVGD AGVQSGNNYD EDRRSQVVTQ SEFVTRHLFP VGHGGGGGGG GGGGGGDEPG  120
RLNQAQQANS LLLCPNTNEL QEMRLVQVQQ QKATVQPNPV GKKSRRGPRS RSSQYRGVTF  180
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEDMKQ  240
MKNFSKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEA  300
DAARAYDKAA IECNGREAVT NFEASTYEGN TLPAPRHGSE HDLNLRLGIS TPSLGEGSSR  360
NENLEQTHLN YVHDTRRLQL ENPVSTTVGI TALKGLPLTS GHPTPWNGVY PTFVPNYEGS  420
ATNTRTIAGS SQGPPNWAWQ LHGHNHIPTA ASSGFSAPAA TTAVMTSGSH YSRDTISMAA  480
LNSHYSPATT ATSSSQYYYQ IRPPPPPPPP P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	4e-93	AP2 family protein