PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982070.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 355aa MW: 39519.2 Da PI: 7.3925

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	218	272	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k XP_024982070.1 218 RKKLRLTKQQSAFLEDSFKEHNTLNPKQKLVLANQLNLRPRQVEVWFQNRRARTK 272 678899***********************************************98 PP
2	HD-ZIP_I/II	125	3.5e-40	218	308	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+k+q+++LE+sF+e+++L+p++K la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk XP_024982070.1 218 RKKLRLTKQQSAFLEDSFKEHNTLNPKQKLVLANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKTCCETLTEENRRLQKELQELR-ALK 308 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MELGLSLGDT PKPVSFADRS ISQLQKTKDS GFYMGLNSSS TIQDPHHKNF RENDDDDKTN 60 CSSSSSDRPL VQLDLLPFSP ALDQSPPPPP SHRPFPWLSQ ILIADTGHRT KLGKGLDVKP 120 LTAIYDPDIC KEPATVQSSP DNSNSDTSSF QMDFSSIFKS STGSSRLPSK QRDLELTKGS 180 FDYLVEASER DQRVLSSRGG GGGGYGGTSD EEENGLGRKK LRLTKQQSAF LEDSFKEHNT 240 LNPKQKLVLA NQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKTCCETL TEENRRLQKE 300 LQELRALKTS QPFYMQLPAT TLTMCPSCER VVTTTPATTT TTTLPQEPAA NNGRP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MELGLSLGDT PKPVSFADRS ISQLQKTKDS GFYMGLNSSS TIQDPHHKNF RENDDDDKTN  60
CSSSSSDRPL VQLDLLPFSP ALDQSPPPPP SHRPFPWLSQ ILIADTGHRT KLGKGLDVKP  120
LTAIYDPDIC KEPATVQSSP DNSNSDTSSF QMDFSSIFKS STGSSRLPSK QRDLELTKGS  180
FDYLVEASER DQRVLSSRGG GGGGYGGTSD EEENGLGRKK LRLTKQQSAF LEDSFKEHNT  240
LNPKQKLVLA NQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKTCCETL TEENRRLQKE  300
LQELRALKTS QPFYMQLPAT TLTMCPSCER VVTTTPATTT TTTLPQEPAA NNGRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	275	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-72	HD-ZIP family protein