PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982098.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 265aa MW: 30123.5 Da PI: 5.371

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.7	8.6e-32	102	159	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++k+s +prsYY+Ct ++C +kk+vers+edp++++itYeg H h XP_024982098.1 102 DDGYKWRKYGQKSIKNSSNPRSYYKCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHY 159 8******************************************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MEELEPCYWS QGFQDDLLCH LLNDDSPFLF VTPEISSDAN SINNFISSIY SGPTITDIET 60 ALLASDNTTP DLSSLARISE MESRVENKYI LKIKNSGNVM ADDGYKWRKY GQKSIKNSSN 120 PRSYYKCTNP RCGAKKQVER SNEDPDTLII TYEGLHLHYM YPLFVFGQSE NPDPPTKKFR 180 RFNLESHKRP TEDTDKNEPS TMLRDHQKES SEVVFSPQGL LEDMVPLLIR NPIIYTTNSS 240 NSSSSSSSHH PSPPTSPSFS WSPKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	1e-40	WRKY family protein