PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982178.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 255aa    MW: 28691.3 Da    PI: 6.0576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-21102153156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     ++y+GVr+++ +grW+AeIrdps    r kr++lg+f+t+eeAa  +++a+  l+g+
  XP_024982178.1 102 KKYRGVRRRP-WGRWAAEIRDPS----RrKRVWLGTFDTPEEAATVYDNAAVMLKGH 153
                     59********.**********84....34**********************998886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEIRSPMYVR SGVKFSEHVV TTNKFVHDEP TTTTTAALVK QKVVRITLTD PYATDSSGDD  60
GGVVMVRRVK KHVFEINVNP PSSSNESRTR RRRVRRTGSV EKKYRGVRRR PWGRWAAEIR  120
DPSRRKRVWL GTFDTPEEAA TVYDNAAVML KGHNAVTNFP TVSVTETVIV ESKNPMVTTT  180
TGDEEPVNDV VLSPTSVLPF DDKLPPFDGL GYCDVDAFGF HIDVPINFPE FFVPEKYSGE  240
EFGDFDIDDF LVDVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195111RRTGSVEKKYRGVRRRP
2108127RRRPWGRWAAEIRDPSRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-31ERF family protein