PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982202.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 510aa MW: 56580.9 Da PI: 7.2121

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.2e-15	175	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d r k+ +lg f+t Aa+a+++a+ k++g XP_024982202.1 175 SQYRGVTFYRRTGRWESHIWD------RgKQLYLGGFDTSHAAARAYDRAAIKFRG 224 78*****************......55***********************98 PP
2	AP2	38.9	2.1e-12	267	317	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g XP_024982202.1 267 SRYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEVEAARAYDKAAIKCNG 317 79******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLDLNVDVVV INKNCDRSSF DTNGCIAVNK NVHEDRQSEI HSGTSVSSDV LNTDEDNPLV 60 TDDVVDDEDS VSYSAFDKRS FRNDIFSQTG ESRENSNRVS VGLITRQFFP VVSYLELEEE 120 LGSPLIKASP SATSVLGLDW LNLKVPEAAP MPQNMQPLPP QKARKSRRGP PSKSSQYRGV 180 TFYRRTGRWE SHIWDRGKQL YLGGFDTSHA AARAYDRAAI KFRGNDADIN FDISDYEEDM 240 TQVKNLSKEE FIHILRRQSN GFSRGSSRYR GVTLHKCGRW EARMGQLLGK KYVYLGLFDN 300 EVEAARAYDK AAIKCNGREA VTNFEPSTYS TDINLEERDE ANGHNLDLNL GVSPTTAGPE 360 RNHKVQNVDV GFTACELSSG KRQKVGGLAP TSIGGRSHTA VPHHYPAWPS MYSGHPPNYE 420 DMGRGKGSAG VVPSADAAWQ MQMQMATSHH VVVPFPVAST AASSGFSSFT NFTDPLFLST 480 KNMQQQQQQK KKNKITSFNP MPPAATSSQY

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLDLNVDVVV INKNCDRSSF DTNGCIAVNK NVHEDRQSEI HSGTSVSSDV LNTDEDNPLV  60
TDDVVDDEDS VSYSAFDKRS FRNDIFSQTG ESRENSNRVS VGLITRQFFP VVSYLELEEE  120
LGSPLIKASP SATSVLGLDW LNLKVPEAAP MPQNMQPLPP QKARKSRRGP PSKSSQYRGV  180
TFYRRTGRWE SHIWDRGKQL YLGGFDTSHA AARAYDRAAI KFRGNDADIN FDISDYEEDM  240
TQVKNLSKEE FIHILRRQSN GFSRGSSRYR GVTLHKCGRW EARMGQLLGK KYVYLGLFDN  300
EVEAARAYDK AAIKCNGREA VTNFEPSTYS TDINLEERDE ANGHNLDLNL GVSPTTAGPE  360
RNHKVQNVDV GFTACELSSG KRQKVGGLAP TSIGGRSHTA VPHHYPAWPS MYSGHPPNYE  420
DMGRGKGSAG VVPSADAAWQ MQMQMATSHH VVVPFPVAST AASSGFSSFT NFTDPLFLST  480
KNMQQQQQQK KKNKITSFNP MPPAATSSQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	7e-92	AP2 family protein