PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982230.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26412.5 Da    PI: 9.8681
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien s rqvtfskRr+g++KKA+EL +LCdaev viifsstgkly ++s
  XP_024982230.1  9 KKIENVSSRQVTFSKRRAGLMKKAKELAILCDAEVGVIIFSSTGKLYGFAS 59
                    68*********************************************9986 PP
2K-box65.42.1e-228017010100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++k+ + + el+ Lk+ei +L++ qR ++G++Le Ls+keL++Le+qL++++  ++++K+  lle+ie+++ +e+++ +en+aL+k++ e
  XP_024982230.1  80 TSEKQHEVDPELEALKAEIVKLRKGQRLMIGKELEGLSYKELEHLERQLHDGMLAVKNRKDMALLEEIEQTKLREQKTMQENEALKKQITE 170
                     5666778999******************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MGRGRIEIKK IENVSSRQVT FSKRRAGLMK KAKELAILCD AEVGVIIFSS TGKLYGFASS  60
RLQNIISRYE RNSDCLDNPT SEKQHEVDPE LEALKAEIVK LRKGQRLMIG KELEGLSYKE  120
LEHLERQLHD GMLAVKNRKD MALLEEIEQT KLREQKTMQE NEALKKQITE HLNKSTTNPE  180
IRLVGRKSPF ISPSPVAYLR SDNGDVGISL HLGLSPREDH PKKKVPKIEF DP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-49MIKC_MADS family protein