PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982233.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 345aa MW: 39032.9 Da PI: 7.4973

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.7	1.2e-23	163	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 +Dgy WrKYGqK+v + +fpr YYrCt++ gC++ k+v++ ++ + +v++itY g+H+++ XP_024982233.1 163 EDGYGWRKYGQKSVLNFKFPRCYYRCTHKfdhGCKASKQVQKLEDeESNVFHITYFGHHTCP 224 8*************************9999*****9875167899*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MTCEQDACFN SDGGYVMSGE GRRPRKEEGL DWIRTLHLSV RVLKMEENKK SLMETLLRGR 60 NSAKTLQSLL LENVKDEGSV SVDDLVMELL GSFYTCLSMV NTCNSNKISR VSTCSRMGNL 120 ARIANWPLKV YNGSKPAPVV KKGRGCYKRR SMASGTTVSD TIEDGYGWRK YGQKSVLNFK 180 FPRCYYRCTH KFDHGCKASK QVQKLEDEES NVFHITYFGH HTCPTTPPQT FSHHGPVINF 240 KDFKNHQYSS ISIPATAINI HFDPSFEQKD DINMFDNVTS TNLFAAFGSK DTSGYDMNAC 300 HEFASFMGFN HGGSYASKSS WDNLFENNDF LNDIPLDDTM FSELI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MTCEQDACFN SDGGYVMSGE GRRPRKEEGL DWIRTLHLSV RVLKMEENKK SLMETLLRGR  60
NSAKTLQSLL LENVKDEGSV SVDDLVMELL GSFYTCLSMV NTCNSNKISR VSTCSRMGNL  120
ARIANWPLKV YNGSKPAPVV KKGRGCYKRR SMASGTTVSD TIEDGYGWRK YGQKSVLNFK  180
FPRCYYRCTH KFDHGCKASK QVQKLEDEES NVFHITYFGH HTCPTTPPQT FSHHGPVINF  240
KDFKNHQYSS ISIPATAINI HFDPSFEQKD DINMFDNVTS TNLFAAFGSK DTSGYDMNAC  300
HEFASFMGFN HGGSYASKSS WDNLFENNDF LNDIPLDDTM FSELI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-34	WRKY family protein