PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982253.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 289aa MW: 31619.2 Da PI: 8.4588

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	227	249	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ Fs +L H ++ H XP_024982253.1 227 VCPICKMKFSLVADLIDHVQKvH 249 6*****************99988 PP
2	zf-C2H2	16.9	1.7e-05	261	283	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H XP_024982253.1 261 VCPKCSKGFRDPVALVEHVEKeH 283 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MGTPAIPNLG KQCSVNDCKL IDFLPFTCDC CNKVFCLEHR SYSTHQCPKA NKNDLTVVVC 60 PLCAKGVHLV PDQDPNITWE SHVNTDCDPS NYEKVTNKKK CPVRGCKQTL TFSNTIKCRD 120 CTLDHCLKHR FGPDHSCPGP KKFEPSFPFW GFSNGKPQNP PPKRATNQVH PGSSSSSSKW 180 ATSFLKAASS VKASAEAGMA KLSNDIGQAF QGGKDGDGPS RGGEVEVCPI CKMKFSLVAD 240 LIDHVQKVHE KKGVMNVTLD VCPKCSKGFR DPVALVEHVE KEHRGTFKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-110	C2H2 family protein