PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982302.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 309aa    MW: 35519.5 Da    PI: 6.3565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.4e-51101381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+++k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ 
  XP_024982302.1  10 LPPGFRFYPSDEELVCHYLYKKIANEDVLK-GTLVEIDLHTCEPWQLPETAKLNSSEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVVDP 103
                     79************************9655.78***************88888999*************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +g  +g++ktLvfyk+rap+g+kt W+mhe+rle
  XP_024982302.1 104 rSGVIIGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 138
                     67778***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEDVLKG TLVEIDLHTC EPWQLPETAK  60
LNSSEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRTV VDPRSGVIIG MRKTLVFYKN  120
RAPNGVKTGW IMHEFRLENP HIPPKEDWVL CRVFYKAKGD NSNEHSPQHM YHNTASHDGV  180
TSPNLGTSPT TISTGCQPPP CIHHHHHPPF TTTNSSTTLS NQTPTPPIHH QNYFGISPQQ  240
YNHQNLLQLS QDATLKESTD QMFMSSNNKC DDQYGFFYDM VFEDYVPSHN LQDMELDDDD  300
NDNGIVFYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-90NAC family protein