PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982318.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 239aa MW: 26559.4 Da PI: 6.2197

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.3	2.6e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv++pyf++eq +++fa++h++FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++l XP_024982318.1 7 PCGACKFLRRKCVRGCVFSPYFCHEQgAAHFAAIHRVFGASNVSKLLAHLPVNGRCEAAITIAYEAQARIQDPIYGCVSHIFALQQQVVSLQSQL 101 7***********************89***************************************************************** PP DUF260 95 allkee 100 a+l+e+ XP_024982318.1 102 ASLREQ 107 *99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MTGSGSPCGA CKFLRRKCVR GCVFSPYFCH EQGAAHFAAI HRVFGASNVS KLLAHLPVNG 60 RCEAAITIAY EAQARIQDPI YGCVSHIFAL QQQVVSLQSQ LASLREQAAQ SLINGSSCSN 120 YVANDHRPNG RLPSYTPPQD IQSWLQESES SCRNVPQYDQ NSSTNNNVGN MNEIMNFNSI 180 KENNQNSLLK EEDGSFSSFQ EGSSYSIESL DMQMSYNKEW AFQENSEDLH SIAFGYIHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-54	LBD family protein