PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982389.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 481aa MW: 54154.9 Da PI: 7.9453

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	357	404	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E ++l+d+v+ +G g W+ I + + +Rt+ ++k++w+++l XP_024982389.1 357 WSVSEVKKLIDGVAHFGVGKWTHIKKLLFstsVHRTPVDLKDKWRNLL 404 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MNQVEEESLY HSLEEEAIVD CLLVEPRSDQ VSVSGVWCFD EDNHGKCIKT EDAPYKLGVP 60 DSNLNAECVD TTKLNALDVL QHEVGVENLL AANGVSACDD YLLDIGYVEH GSCIDYGSNE 120 GLHVGNCSSE SRFPMFHDKG SYGIRSSLTE NIRGSKCDNY FIGKTMCDMH HSYNCNCIFG 180 SSSESKTVDR FGDFSKSFIY EENKEDNPPP RFAQNRMEVS TICRDVPDQD HHGGVGSVTH 240 KRSRKPTKRY IDESSNLDLR NCKKRREASS VSKVKISKIR RPKIQNEVEP KEKLPTSGIS 300 FGKAIQVPFI SQGPTECQQN NSPPMIENRM ESYSSDDSET MMKSESGGNP RKHHRLWSVS 360 EVKKLIDGVA HFGVGKWTHI KKLLFSTSVH RTPVDLKDKW RNLLKASRAL NGSSRIEDEQ 420 KRSQPWRPLP KSILCRVREL ATVYPYPREG NSKISKSKFP LARHVSSPAR IKGNNNQVPV 480 V

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MNQVEEESLY HSLEEEAIVD CLLVEPRSDQ VSVSGVWCFD EDNHGKCIKT EDAPYKLGVP  60
DSNLNAECVD TTKLNALDVL QHEVGVENLL AANGVSACDD YLLDIGYVEH GSCIDYGSNE  120
GLHVGNCSSE SRFPMFHDKG SYGIRSSLTE NIRGSKCDNY FIGKTMCDMH HSYNCNCIFG  180
SSSESKTVDR FGDFSKSFIY EENKEDNPPP RFAQNRMEVS TICRDVPDQD HHGGVGSVTH  240
KRSRKPTKRY IDESSNLDLR NCKKRREASS VSKVKISKIR RPKIQNEVEP KEKLPTSGIS  300
FGKAIQVPFI SQGPTECQQN NSPPMIENRM ESYSSDDSET MMKSESGGNP RKHHRLWSVS  360
EVKKLIDGVA HFGVGKWTHI KKLLFSTSVH RTPVDLKDKW RNLLKASRAL NGSSRIEDEQ  420
KRSQPWRPLP KSILCRVREL ATVYPYPREG NSKISKSKFP LARHVSSPAR IKGNNNQVPV  480
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	293	KKRREASSVSKVKISKIRRPKIQNEVEPKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	3e-24	MYB_related family protein