PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982391.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 456aa MW: 51634.2 Da PI: 8.8142

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	332	379	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E ++l+d+v+ +G g W+ I + + +Rt+ ++k++w+++l XP_024982391.1 332 WSVSEVKKLIDGVAHFGVGKWTHIKKLLFstsVHRTPVDLKDKWRNLL 379 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MLYASSCRHV VSVAFALDDR GKQLVEEESL YHSLEEEAIV DCLLVEPRSD QVSVSGVWCF 60 DEDNHGKCIK TEDAPYKLDI GYVEHGSCID YGSNEGLHVG NCSSESRFPM FHDKGSYGIR 120 SSLTENIRGS KCDNYFIGKT MCDMHHSYNC NCIFGSSSES KTVDRFGDFS KSFIYEENKE 180 DNPPPRFAQN RMEVSTICRD VPDQDHHGGV GSVTHKRSRK PTKRYIDESS NLDLRNCKKR 240 REASSVSKVK ISKIRRPKIQ NEVEPKEKLP TSGISFGKAI QVPFISQGPT ECQQNNSPPM 300 IENRMESYSS DDSETMMKSE SGGNPRKHHR LWSVSEVKKL IDGVAHFGVG KWTHIKKLLF 360 STSVHRTPVD LKDKWRNLLK ASRALNGSSR IEDEQKRSQP WRPLPKSILC RVRELATVYP 420 YPREGNSKIS KSKFPLARHV SSPARIKGNN NQVPVV

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MLYASSCRHV VSVAFALDDR GKQLVEEESL YHSLEEEAIV DCLLVEPRSD QVSVSGVWCF  60
DEDNHGKCIK TEDAPYKLDI GYVEHGSCID YGSNEGLHVG NCSSESRFPM FHDKGSYGIR  120
SSLTENIRGS KCDNYFIGKT MCDMHHSYNC NCIFGSSSES KTVDRFGDFS KSFIYEENKE  180
DNPPPRFAQN RMEVSTICRD VPDQDHHGGV GSVTHKRSRK PTKRYIDESS NLDLRNCKKR  240
REASSVSKVK ISKIRRPKIQ NEVEPKEKLP TSGISFGKAI QVPFISQGPT ECQQNNSPPM  300
IENRMESYSS DDSETMMKSE SGGNPRKHHR LWSVSEVKKL IDGVAHFGVG KWTHIKKLLF  360
STSVHRTPVD LKDKWRNLLK ASRALNGSSR IEDEQKRSQP WRPLPKSILC RVRELATVYP  420
YPREGNSKIS KSKFPLARHV SSPARIKGNN NQVPVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	268	KKRREASSVSKVKISKIRRPKIQNEVEPKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	4e-24	MYB_related family protein