PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982479.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 289aa    MW: 32322.7 Da    PI: 6.609
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.7e-33129185158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR RgsgGrF
  XP_024982479.1 129 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRGSGGRF 185
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MSSTAMRGNS SDSSSPEQSV DRESESDEVL SEEEDDVSKE TQNAPFPSDS YGQEQQNVQQ  60
GVPNMLPSNE QTLGQVPLEL VGHSIACAPN PYCDPYYSGM MAAYGQPLVH PQFLDMHQAR  120
MPLPLEMTQE PVYVNAKQYH AILRRRQSRA KAELEKKLIK DRKPYLHESR HQHAMRRVRG  180
SGGRFAKKTE VDSLKRADED KNTTASGSAI SSQSVNSTGI KRMRLESAES LDFHKETRGD  240
RLVNSLRYNN EDNYQASGYH LDRGDGGSLG QQWISISSNQ ASQRAVAMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-59NF-YA family protein